Rice gene details
Searching for LOC_Os12g39180 [natural resistance-associated macrophage protein, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os12g39180.1 542 107 469 PF01566.10 Nramp
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  -1
N22 Root FC
  2
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  1
IR64 Root FC
  1

Functional details
Molecular Function
Not found
1 GO:0005215 transporter activity (RGAP)
Biological process
Not found
1 GO:0019725 cellular homeostasis (RGAP)
2 GO:0006810 transport (RGAP)
3 GO:0009987 cellular process (RGAP)
Cellular component
Not found

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 MCE:1000143 iron deficiency treatment (+)

Metabolic Pathway details
Not found

QTL details
Not found

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0007001 FR.01 early stage of fruit ripening (+)
2 PO:0007010 6 ripening (+)
3 PO:0007041 inflorescence emergence from flag leaf sheath (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000315 second leaf from base (+)
2 PO:0009006 shoot system (+)
3 PO:0020039 leaf lamina (+)
4 PO:0020103 flag leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Xu Yanxia; Zhang Saina; Guo Haipeng; Wang Suikang; Xu Ligen; Li Chuanyou; Qian Qian; Chen Fan; Geisler Markus; Qi Yanhua; Jiang De An; OsABCB14 functions in auxin transport and iron homeostasis in rice (Oryza sativa L.). The Plant journal : for cell and molecular biology 2014:79
PMID [24798203]


2  Sperotto Raul A; Boff Tatiana; Duarte Guilherme L; Santos Lívia S; Grusak Michael A; Fett Janette P; Identification of putative target genes to manipulate Fe and Zn concentrations in rice grains. Journal of Plant Physiology 2010:167
PMID [20580124]


3  Narayanan Narayanan N; Vasconcelos Marta W; Grusak Michael A; Expression profiling of Oryza sativa metal homeostasis genes in different rice cultivars using a cDNA macroarray. Plant Physiology and Biochemistry 2007:45
PMID [17468002]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India