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Searching for LOC_Os12g39180
[natural resistance-associated macrophage protein, putative, expressed ] |
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Basic information [Pfam DB] |
Graphical representation of the protein domains |
S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Pfam ID |
Domain Name |
1 |
LOC_Os12g39180.1 |
542 |
107 |
469 |
PF01566.10 |
Nramp |
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The basic information is from RGAP and Pfam/InterPro databases |
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Gene model (download) 
IR64 N22
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Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC |
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N22InfloresenceFC |
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N22 Root FC |
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IR64 Flag-leaf FC |
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IR64InfloresenceFC |
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IR64 Root FC |
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Functional details
Molecular Function
Not found |
1 |
GO:0005215 |
transporter activity |
(RGAP) |
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Biological process
Cellular component
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Environment details
S. No. |
EO Id |
EO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCE:1000143 |
iron deficiency treatment |
(+) |
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Metabolic Pathway details
QTL details
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Plant developmental stage / tissue details
Plant development stage
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
PO:0007001 |
FR.01 early stage of fruit ripening |
(+) |
2 |
PO:0007010 |
6 ripening |
(+) |
3 |
PO:0007041 |
inflorescence emergence from flag leaf sheath |
(+) |
Plant tissue/organ
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCP:1000315 |
second leaf from base |
(+) |
2 |
PO:0009006 |
shoot system |
(+) |
3 |
PO:0020039 |
leaf lamina |
(+) |
4 |
PO:0020103 |
flag leaf |
(+) |
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
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Trait details
Physical interaction details
Interaction type: protein-protein
Interaction type: protein-DNA
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Related publications [Sorted by year] |
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1 |
Xu Yanxia; Zhang Saina; Guo Haipeng; Wang Suikang; Xu Ligen; Li Chuanyou; Qian Qian; Chen Fan; Geisler Markus; Qi Yanhua; Jiang De An; OsABCB14 functions in auxin transport and iron homeostasis in rice (Oryza sativa L.). The Plant journal : for cell and molecular biology 2014:79
PMID [24798203]
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2 |
Sperotto Raul A; Boff Tatiana; Duarte Guilherme L; Santos LÃvia S; Grusak Michael A; Fett Janette P; Identification of putative target genes to manipulate Fe and Zn concentrations in rice grains. Journal of Plant Physiology 2010:167
PMID [20580124]
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3 |
Narayanan Narayanan N; Vasconcelos Marta W; Grusak Michael A; Expression profiling of Oryza sativa metal homeostasis genes in different rice cultivars using a cDNA macroarray. Plant Physiology and Biochemistry 2007:45
PMID [17468002]
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