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Searching for LOC_Os12g39710
[expressed protein ] |
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Basic information [Pfam DB] |
Graphical representation of the protein domains |
S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Pfam ID |
Domain Name |
1 |
LOC_Os12g39710.1 |
508 |
247 |
389 |
PF07762.6 |
DUF1618 |
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The basic information is from RGAP and Pfam/InterPro databases |
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Gene model (download) 
IR64 N22
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Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC |
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N22InfloresenceFC |
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N22 Root FC |
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IR64 Flag-leaf FC |
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IR64InfloresenceFC |
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IR64 Root FC |
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Functional details
Molecular Function
S. No. |
GO Id |
GO Description |
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Biological process
S. No. |
GO Id |
GO Description |
1 |
GO:0009651 |
response to salt stress |
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2 |
GO:0009751 |
response to salicylic acid stimulus |
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Cellular component
S. No. |
GO Id |
GO Description |
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Environment details
S. No. |
EO Id |
EO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
EO:0007048 |
sodium chloride regimen |
(+) |
2 |
EO:0007187 |
salicylic acid regimen |
(+) |
3 |
EO:0007319 |
warm/hot air temperature regimen |
(+) |
4 |
EO:0007332 |
cold air temperature regimen |
(+) |
5 |
MCE:1000016 |
polyethylene glycol (PEG) treatment |
(+) |
6 |
MCE:1000280 |
recovery treatment from heat stress |
(+) |
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Metabolic Pathway details
QTL details
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Plant developmental stage / tissue details
Plant development stage
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCP:1000518 |
seedling development stage |
(+) |
2 |
MCP:1000520 |
young inflorescence stage |
(+) |
Plant tissue/organ
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
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Trait details
Physical interaction details
Interaction type: protein-protein
Interaction type: protein-DNA
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Related publications [Sorted by year] |
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1 |
Wang Lan; Shen Rongxin; Chen Le-Tian; Liu Yao-Guang; Characterization of a novel DUF1618 gene family in rice. Journal of integrative plant biology 2014:56
PMID [24237627]
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