Rice gene details
Searching for LOC_Os12g39830 [cyclin, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os12g39830.1 366 103 200 PF00134.15 Cyclin_N
2 LOC_Os12g39830.1 366 202 338 PF02984.11 Cyclin_C
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  1
N22 Root FC
  4
IR64 Flag-leaf FC
  6
IR64InfloresenceFC
  1
IR64 Root FC
  2

Functional details
Molecular Function
Not found
1 GO:0016301 kinase activity (RGAP)
Biological process
Not found
1 GO:0006464 protein modification process (RGAP)
2 GO:0007049 cell cycle (RGAP)
Cellular component
Not found
1 GO:0005634 nucleus (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007204 1-naphthaleneacetic acid (+)

Metabolic Pathway details
Not found

QTL details
Not found

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Zhao Heming; Ma Tengfei; Wang Xin; Deng Yingtian; Ma Haoli; Zhang Rongsheng; Zhao Jie; OsAUX1 controls lateral root initiation in rice (Oryza sativa L.). Plant, cell & environment 2014:
PMID [25311360]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India