Rice gene details
Searching for LOC_Os12g39970 [expressed protein ]

Basic information [Interpro DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Interpro ID Domain Name
1 LOC_Os12g39970.1 386 143 157 seg
2 LOC_Os12g39970.1 386 256 261 seg
3 LOC_Os12g39970.1 386 324 345 coiled-coil
4 LOC_Os12g39970.2 386 143 157 seg
5 LOC_Os12g39970.2 386 256 261 seg
6 LOC_Os12g39970.2 386 324 345 coiled-coil
7 LOC_Os12g39970.3 386 143 157 seg
8 LOC_Os12g39970.3 386 256 261 seg
9 LOC_Os12g39970.3 386 324 345 coiled-coil
10 LOC_Os12g39970.4 386 143 157 seg
11 LOC_Os12g39970.4 386 256 261 seg
12 LOC_Os12g39970.4 386 324 345 coiled-coil
13 LOC_Os12g39970.5 386 143 157 seg
14 LOC_Os12g39970.5 386 256 261 seg
15 LOC_Os12g39970.5 386 324 345 coiled-coil
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  2
N22 Root FC
  3
IR64 Flag-leaf FC
  5
IR64InfloresenceFC
  2
IR64 Root FC
  7

Functional details
Molecular Function
S. No. GO Id GO Description
Biological process
S. No. GO Id GO Description
1 GO:0009408 response to heat  
2 GO:0009409 response to cold  
3 GO:0009751 response to salicylic acid stimulus  
Cellular component
S. No. GO Id GO Description

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007187 salicylic acid regimen (+)
3 EO:0007319 warm/hot air temperature regimen (+)
4 EO:0007332 cold air temperature regimen (+)
5 MCE:1000016 polyethylene glycol (PEG) treatment (+)
6 MCE:1000280 recovery treatment from heat stress (+)

Metabolic Pathway details
Not found

QTL details
Not found

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 MCP:1000520 young inflorescence stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
2 PO:0009005 root (+)
3 PO:0009047 stem (+)
4 PO:0009049 inflorescence (+)
5 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Wang Lan; Shen Rongxin; Chen Le-Tian; Liu Yao-Guang; Characterization of a novel DUF1618 gene family in rice. Journal of integrative plant biology 2014:56
PMID [24237627]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India