Rice gene details
Searching for LOC_Os12g41950 [auxin response factor, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os12g41950.1 900 131 236 PF02362.13 B3
2 LOC_Os12g41950.1 900 258 341 PF06507.5 Auxin_resp
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  -1
N22 Root FC
  2
IR64 Flag-leaf FC
  4
IR64InfloresenceFC
  -1
IR64 Root FC
  -1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0016563 transcription activator activity  
2 GO:0003700 sequence-specific DNA binding transcription factor activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009908 flower development (RGAP)
2 GO:0009719 response to endogenous stimulus (RGAP)
3 GO:0009058 biosynthetic process (RGAP)
4 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005634 nucleus (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007070 indole acetic acid regimen (+)
2 EO:0007080 jasmonic acid regimen (+)
3 EO:0007105 abscisic acid regimen (+)
4 EO:0007180 2,4-dichlorophenoxyacetic acid (+)
5 EO:0007187 salicylic acid regimen (+)
6 EO:0007204 1-naphthaleneacetic acid (+)
7 MCE:1000023 benzyl aminopurine (BPA) (+)
8 MCE:1000056 1-aminocyclopropane-1-carboxylic acid (+)
9 MCE:1000063 epibrassinolide (+)
10 MCE:1000129 triiodobenzoic acid (+)
11 MCE:1000173 cadmium nutrient regimen (+)
12 MCE:1000239 1-naphthylphthalamic acid (NPA) (+)
13 MCE:1000240 1-naphthoxyacetic acids (1-NOA) (+)
14 MCE:1000245 2′-amino-3′-methoxyflavone (PD98059) (+)

Metabolic Pathway details
Not found

QTL details
Not found

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
2 PO:0009005 root (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Zhao Feng Yun; Hu Fan; Zhang Shi Yong; Wang Kai; Zhang Cheng Ren; Liu Tao; MAPKs regulate root growth by influencing auxin signaling and cell cycle-related gene expression in cadmium-stressed rice. Environmental Science and Pollution Research International 2013:
PMID [23430734]


2  Qi Yanhua; Wang Suikang; Shen Chenjia; Zhang Saina; Chen Yue; Xu Yanxia; Liu Yu; Wu Yunrong; Jiang Dean; OsARF12, a transcription activator on auxin response gene, regulates root elongation and affects iron accumulation in rice (Oryza sativa). New phytologist 2011:
PMID [21973088]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India