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Searching for LOC_Os12g41950
[auxin response factor, putative, expressed ] |
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Basic information [Pfam DB] |
Graphical representation of the protein domains |
S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Pfam ID |
Domain Name |
1 |
LOC_Os12g41950.1 |
900 |
131 |
236 |
PF02362.13 |
B3 |
2 |
LOC_Os12g41950.1 |
900 |
258 |
341 |
PF06507.5 |
Auxin_resp |
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The basic information is from RGAP and Pfam/InterPro databases |
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Gene model (download) 
IR64 N22
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Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC |
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N22InfloresenceFC |
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N22 Root FC |
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IR64 Flag-leaf FC |
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IR64InfloresenceFC |
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IR64 Root FC |
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Functional details
Molecular Function
S. No. |
GO Id |
GO Description |
1 |
GO:0016563 |
transcription activator activity |
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2 |
GO:0003700 |
sequence-specific DNA binding transcription factor activity |
(RGAP) |
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Biological process
S. No. |
GO Id |
GO Description |
1 |
GO:0009908 |
flower development |
(RGAP) |
2 |
GO:0009719 |
response to endogenous stimulus |
(RGAP) |
3 |
GO:0009058 |
biosynthetic process |
(RGAP) |
4 |
GO:0006139 |
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process |
(RGAP) |
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Cellular component
S. No. |
GO Id |
GO Description |
1 |
GO:0005634 |
nucleus |
(RGAP) |
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Environment details
Metabolic Pathway details
QTL details
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Plant developmental stage / tissue details
Plant development stage
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCP:1000518 |
seedling development stage |
(+) |
Plant tissue/organ
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
PO:0008037 |
seedling |
(+) |
2 |
PO:0009005 |
root |
(+) |
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
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Trait details
Physical interaction details
Interaction type: protein-protein
Interaction type: protein-DNA
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Related publications [Sorted by year] |
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1 |
Zhao Feng Yun; Hu Fan; Zhang Shi Yong; Wang Kai; Zhang Cheng Ren; Liu Tao; MAPKs regulate root growth by influencing auxin signaling and cell cycle-related gene expression in cadmium-stressed rice. Environmental Science and Pollution Research International 2013:
PMID [23430734]
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2 |
Qi Yanhua; Wang Suikang; Shen Chenjia; Zhang Saina; Chen Yue; Xu Yanxia; Liu Yu; Wu Yunrong; Jiang Dean; OsARF12, a transcription activator on auxin response gene, regulates root elongation and affects iron accumulation in rice (Oryza sativa). New phytologist 2011:
PMID [21973088]
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