Rice gene details
Searching for LOC_Os12g44380 [sucrose transporter, putativ, expressed ]

Basic information [Interpro DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Interpro ID Domain Name
1 LOC_Os12g44380.1 502 1 492 IPR016196 MFS general substrate transporter
2 LOC_Os12g44380.1 502 7 18 seg
3 LOC_Os12g44380.1 502 20 488 SUGAR TRANSPORTER
4 LOC_Os12g44380.1 502 20 488 SUCROSE TRANSPORT
5 LOC_Os12g44380.1 502 22 494 IPR005989 GPH_sucrose: sucrose/H+ symporter
6 LOC_Os12g44380.1 502 101 111 seg
7 LOC_Os12g44380.1 502 226 240 seg
8 LOC_Os12g44380.1 502 462 481 seg
9 LOC_Os12g44380.2 459 7 18 seg
10 LOC_Os12g44380.2 459 20 435 SUGAR TRANSPORTER
11 LOC_Os12g44380.2 459 20 435 SUCROSE TRANSPORT
12 LOC_Os12g44380.2 459 22 459 IPR005989 GPH_sucrose: sucrose/H+ symporter
13 LOC_Os12g44380.2 459 25 436 IPR016196 MFS general substrate transporter
14 LOC_Os12g44380.2 459 101 111 seg
15 LOC_Os12g44380.2 459 226 240 seg
16 LOC_Os12g44380.3 355 22 341 SUGAR TRANSPORTER
17 LOC_Os12g44380.3 355 22 341 SUCROSE TRANSPORT
18 LOC_Os12g44380.3 355 24 345 IPR016196 MFS general substrate transporter
19 LOC_Os12g44380.3 355 79 93 seg
20 LOC_Os12g44380.3 355 315 334 seg
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  3
N22InfloresenceFC
  2
N22 Root FC
  -2
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  2
IR64 Root FC
  6

Functional details
Molecular Function
Not found
1 GO:0005215 transporter activity (RGAP)
Biological process
Not found
1 GO:0006810 transport (RGAP)
2 GO:0009987 cellular process (RGAP)
Cellular component
Not found
1 GO:0016020 membrane (RGAP)
2 GO:0005773 vacuole (RGAP)
3 GO:0005886 plasma membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007174 cold temperature regimen (+)

Metabolic Pathway details
Not found

QTL details
Not found

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000003 whole plant (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Xu Peipei; Cai Weiming; RAN1 is involved in plant cold resistance and development in rice (Oryza sativa). Journal of experimental botany 2014:65
PMID [24790113]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India