Gene Expression
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<-50 -10-
-49		 -5 - -9 -4 -3 -2 -1 0 1 2 3 4 5 6 7 8 9 10-
19		 20-
29		 30-
39		 40-
49		 50-
99
 100-
999		 1000-
4999		 >5000
  Link to Manually Curated Database of Rice Proteins Link to DNA Sequence
FC - Fold Change
S. No. QTL Nipponbare(Protein LOC/miRNA) N22
RNA-Seq		 IR64
RNA-Seq 		Gene Sequence
Chr.No. QTL ID QTL Associated Trait Coord.
start		 Coord.
end 		ID Description Flag-
leafS		 Inflo
resence		 Root Flag-
leaf		 Inflo
resence		 Anjali IR64 N22 PB1 Vandana
FC FC FC FC FC
1 Chr1
AQAF001blast disease resistance
AQAF002blast disease resistance
AQAF003blast disease resistance
AQAI052large vascular bundle number to leaf area ratio
AQCQ001grain yield per plant
AQCQ009grain number
AQCQ0141000-seed weight
AQCQ021grain yield per plant
AQCQ0361000-seed weight
AQGI036root dry weight
AQGI132biomass yield
AQGI161biomass yield
AQGI197total biomass yield
AQGI217total biomass yield
CQAL26grain width
CQAL3grain width
CQAL7chalkiness of endosperm
 198822 :1891260 LOC_Os01g04250 expressed protein
 
1
 
1
- - -
LOC_Os01g04220 DNA binding protein, putative
 
1
-
 
-1
 
1
 
1
LOC_Os01g04230 inactive receptor kinase At2g26730 precursor, putative, expressed -
 
1
 
1
 
2
 
1
LOC_Os01g04210 DNA binding protein, putative -
 
2
 
20
-
 
3
LOC_Os01g04200 metallo-beta-lactamase family protein, putative, expressed
 
2
 
2
 
4
 
2
 
-1
LOC_Os01g04190 transporter family protein, putative, expressed
 
2
 
-2
 
-1
 
3
 
-1
LOC_Os01g04180 retrotransposon protein, putative, unclassified - - - - -
LOC_Os01g04160 expressed protein -
 
1
 
-1
-
 
5
LOC_Os01g04170 expressed protein -
 
8
 
-46
 
1
 
2
LOC_Os01g04150 transposon protein, putative, CACTA, En/Spm sub-class - - - - -
LOC_Os01g04140 transposon protein, putative, CACTA, En/Spm sub-class - - - - -
LOC_Os01g04130 peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed
 
1
 
-1
 
4
 
4
 
-1
LOC_Os01g04120 ZOS1-03 - C2H2 zinc finger protein, expressed
 
-1
 
-2
 
-3
 
2
 
1
LOC_Os01g04110 mediator of RNA polymerase II transcription subunit 22, putative, expressed
 
1
 
1
 
2
 
1
 
1
LOC_Os01g04100 expressed protein
 
-1
 
-1
 
-11
 
1
 
2
LOC_Os01g04090 expressed protein
 
1
 
-2
-
 
1
 
1
LOC_Os01g04080 expressed protein -
 
-2
 
1
 
1
 
1
osa-MIR5824
LOC_Os01g04070 verticillium wilt disease resistance protein, putative, expressed
 
-2
 
-2
 
8
 
3
 
2
LOC_Os01g04050 BBTI12 - Bowman-Birk type bran trypsin inhibitor precursor, expressed
 
36
 
2
 
-12
 
-1
 
2
LOC_Os01g04040 BBTI11 - Bowman-Birk type bran trypsin inhibitor precursor, putative
 
-2
 
-2
 
-1
-
 
8
LOC_Os01g04030 signal peptidase complex subunit 3, putative, expressed
 
-1
 
1
 
2
 
2
 
2
LOC_Os01g04020 AP2 domain containing protein, expressed
 
1
 
-1
 
2
 
3
 
2
LOC_Os01g04005 expressed protein
 
1
-
 
-2
 
1
-
LOC_Os01g04010 expressed protein
 
1
 
2
 
-3
 
2
 
2
LOC_Os01g03989 hypothetical protein
 
1
 
1
 
1
 
1
 
1
LOC_Os01g04000 hypothetical protein
 
1
 
1
-
 
1
 
1
LOC_Os01g03980 expressed protein
 
2
 
-1
 
-21
 
2
 
2
LOC_Os01g03970 hypothetical protein
 
1
 
1
 
1
 
1
 
1
LOC_Os01g03960 hypothetical protein
 
1
 
1
 
1
 
1
 
1
LOC_Os01g03930 hypothetical protein
 
1
 
1
 
1
 
1
 
1
LOC_Os01g03940 expressed protein
 
3
 
1
 
-7
 
-2
 
-1
LOC_Os01g03950 glycosyl hydrolase, family 31, putative, expressed
 
2
 
2
 
-19
 
9
 
2
LOC_Os01g03900 expressed protein
 
1
 
2
- -
 
3
LOC_Os01g03914 cation efflux family protein, putative, expressed
 
-1
 
3
 
2
 
-1
 
-1
LOC_Os01g03890 DUF260 domain containing protein, putative, expressed
 
1
 
1
 
-625
-
 
1
LOC_Os01g03880 retrotransposon protein, putative, Ty3-gypsy subclass - - - - -
LOC_Os01g03870 expressed protein
 
-2
 
-2
 
10
 
2
 
1
LOC_Os01g03840 ZOS1-02 - C2H2 zinc finger protein, expressed
 
1
 
-13
 
1
 
1
 
1
LOC_Os01g03860 retrotransposon protein, putative, unclassified - - - - -
LOC_Os01g03830 retrotransposon protein, putative, unclassified - - - - -
LOC_Os01g03820 C2 domain containing protein, putative, expressed
 
2
 
-2
 
2
 
4
 
-2
LOC_Os01g03810 expressed protein
 
2
-
 
1
 
2
 
1
LOC_Os01g03780 retrotransposon protein, putative, unclassified - - - - -
LOC_Os01g03790 retrotransposon protein, putative, unclassified - - - - -
LOC_Os01g03800 transposon protein, putative, Mutator sub-class - - - - -
LOC_Os01g03770 hypothetical protein
 
1
 
1
 
1
 
1
-
LOC_Os01g03760 expressed protein
 
2
 
-1
 
-2
 
3
 
1
LOC_Os01g03730 nuclease PA3, putative, expressed
 
2
 
-1
 
3
 
3
 
2
LOC_Os01g03750 expressed protein
 
2
 
2
 
-1
 
3
 
2
LOC_Os01g03720 MYB family transcription factor, putative, expressed
 
3
 
6
 
-1
 
-1
 
-1
LOC_Os01g03740 nuclease PA3, putative, expressed
 
-1
 
-1
 
-10
 
1
 
2
LOC_Os01g03710 mannose-6-phosphate isomerase, putative, expressed
 
-5
 
-12
 
-9
 
1
 
2
LOC_Os01g03690 TKL_IRAK_DUF26-lg.1 - DUF26 kinases have homology to DUF26 containing loci, expressed
 
2
 
-2
 
-2
 
2
 
11
LOC_Os01g03670 dihydroflavonol-4-reductase, putative, expressed
 
-3
 
-7
- -
 
-1
LOC_Os01g03680 BBTI8 - Bowman-Birk type bran trypsin inhibitor precursor, expressed
 
11
 
5
 
-19
 
1
-
LOC_Os01g03660 MYB family transcription factor, putative, expressed - - - - -
LOC_Os01g03650 sufB/sufD domain containing protein, putative, expressed
 
1
 
-1
 
2
 
2
 
1
LOC_Os01g03640 multicopper oxidase domain containing protein, expressed
 
1
 
-3
 
-98
-
 
-1
LOC_Os01g03630 multicopper oxidase domain containing protein, expressed
 
-5
 
1
- - -
LOC_Os01g03610 retrotransposon protein, putative, unclassified - - - - -
LOC_Os01g03620 multicopper oxidase domain containing protein, expressed -
 
-2
- -
 
-1
LOC_Os01g03600 retrotransposon protein, putative, Ty3-gypsy subclass - - - - -
LOC_Os01g03570 transcription factor X1, putative, expressed
 
-1
 
-1
 
16
 
2
 
-1
LOC_Os01g03580 transposon protein, putative, CACTA, En/Spm sub-class - - - - -
LOC_Os01g03590 transposon protein, putative, CACTA, En/Spm sub-class - - - - -
LOC_Os01g03549 multi-copper oxidase type I family protein, putative, expressed
 
2
 
1
 
14
 
2
 
1
LOC_Os01g03530 multicopper oxidase domain containing protein, expressed
 
1
 
-4
 
-5
 
2
 
-1
LOC_Os01g03520 ubiquitin conjugating enzyme protein, putative, expressed
 
1
 
-2
 
-1
 
3
 
-1
LOC_Os01g03500 expressed protein
 
1
 
-1
 
5
 
2
 
-1
LOC_Os01g03510 WD domain, G-beta repeat domain containing protein, expressed
 
2
 
-2
 
1
 
3
 
-1
LOC_Os01g03490 heavy-metal-associated domain-containing protein, putative, expressed
 
2
 
-3
 
2
 
4
 
1
LOC_Os01g03480 expressed protein
 
3
 
-3
 
9
 
2
 
3
LOC_Os01g03464 conserved hypothetical protein
 
5
 
-1
 
1
-
 
-4
LOC_Os01g03440 transposon protein, putative, unclassified - - - - -
LOC_Os01g03452 transposon protein, putative, unclassified - - - - -
LOC_Os01g03429 conserved hypothetical protein -
 
2
 
1
- -
LOC_Os01g03420 seven in absentia protein family protein, putative
 
1
-
 
1
 
1
 
1
LOC_Os01g03410 ubiquitin, putative
 
3
 
1
 
7
 
1
 
1
LOC_Os01g03390 BBTI7 - Bowman-Birk type bran trypsin inhibitor precursor, expressed
 
3
 
11
 
2
 
2
 
-1
LOC_Os01g03400 E3 ubiquitin-protein ligase SINA-like 2, putative -
 
1
 
10
 
1
 
1
LOC_Os01g03380 BBTI6 - Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
 
1
 
2
-
 
1
 
1
LOC_Os01g03370 senescence-induced receptor-like serine/threonine-protein kinase precursor, putative
 
1
-
 
-30
 
1
 
1
LOC_Os01g03360 BBTI5 - Bowman-Birk type bran trypsin inhibitor precursor, expressed
 
2
 
2
 
1
-
 
4
LOC_Os01g03340 BBTI4 - Bowman-Birk type bran trypsin inhibitor precursor, expressed
 
6
 
4
 
-10
 
-2
 
2
LOC_Os01g03350 conserved hypothetical protein
 
1
-
 
1
 
1
 
1
LOC_Os01g03330 BBTI3 - Bowman-Birk type bran trypsin inhibitor precursor, expressed
 
10
 
9
 
-18
 
1
 
-1
LOC_Os01g03320 BBTI2 - Bowman-Birk type bran trypsin inhibitor precursor, expressed
 
2
 
2
 
2
 
-4
 
-2
LOC_Os01g03300 seven in absentia protein family protein
 
-1
 
-2
- -
 
2
LOC_Os01g03310 BBTI1 - Bowman-Birk type bran trypsin inhibitor precursor, expressed
 
1
 
-2
 
2
 
-1
 
-3
LOC_Os01g03290 seven in absentia protein family domain containing protein
 
1
 
1
 
1
 
-4
 
-2
LOC_Os01g03280 hypothetical protein
 
1
 
1
 
1
 
1
 
2
LOC_Os01g03240 conserved hypothetical protein - -
 
1
-
 
-3
LOC_Os01g03250 hypothetical protein
 
1
 
1
 
1
 
1
 
1
LOC_Os01g03260 hypothetical protein -
 
-3
 
2
 
1
 
2
LOC_Os01g03270 conserved hypothetical protein
 
1
-
 
1
 
1
 
-2
LOC_Os01g03230 retrotransposon protein, putative, unclassified, expressed - - - - -
LOC_Os01g03220 hypothetical protein
 
1
 
-6
 
1
 
1
-
LOC_Os01g03210 conserved hypothetical protein
 
1
 
1
 
1
 
1
-
LOC_Os01g03200 retrotransposon protein, putative, Ty1-copia subclass, expressed - - - - -
LOC_Os01g03190 expressed protein
 
1
 
-1
 
1
 
1
 
-1
LOC_Os01g03180 retrotransposon protein, putative, unclassified, expressed - - - - -
LOC_Os01g03160 xylosyltransferase, putative, expressed
 
-1
 
-1
 
-1
 
2
 
2
LOC_Os01g03170 seven in absentia protein family protein, expressed
 
1
 
-1
 
-1
 
2
 
1
LOC_Os01g03144 white-brown complex homolog protein 7, putative, expressed
 
1
 
2
 
-1
 
2
 
1
osa-MIR159b
LOC_Os01g03130 expressed protein
 
2
 
1
 
-12
 
3
 
7
LOC_Os01g03110 expressed protein
 
1
 
-1
 
1
 
2
 
1
LOC_Os01g03100 protein binding protein, putative, expressed
 
1
 
1
 
-1
 
-2
 
-1
LOC_Os01g03080 expressed protein
 
1
 
2
 
-3
-
 
-1
LOC_Os01g03090 methyltransferase, putative, expressed
 
-1
 
1
 
-1
 
1
 
1
LOC_Os01g03070 transposon protein, putative, unclassified, expressed - - - - -
LOC_Os01g03050 fruit protein PKIWI502, putative, expressed
 
3
 
-2
 
-1
 
2
 
-1
LOC_Os01g03060 splicing factor, putative, expressed
 
-1
 
-2
 
2
 
2
 
3
LOC_Os01g03040 expressed protein
 
1
 
4
 
26
 
2
 
1
LOC_Os01g03030 alanyl-tRNA synthetase, putative, expressed
 
2
 
2
 
-1
 
2
 
1
LOC_Os01g03010 hypothetical protein
 
1
 
1
 
1
 
1
 
1
LOC_Os01g03020 tRNA synthetase class I, putative, expressed
 
1
 
-1
 
5
 
2
 
-1
LOC_Os01g02970 retrotransposon protein, putative, unclassified - - - - -
LOC_Os01g02980 hypothetical protein
 
1
 
1
 
5
 
1
 
-2
LOC_Os01g02990 hypothetical protein
 
1
 
1
-
 
1
-
LOC_Os01g02960 expressed protein
 
1
 
-1
 
2
 
3
 
1
LOC_Os01g02950 hypothetical protein
 
1
 
-4
-
 
1
 
-2
LOC_Os01g02930 glycosyltransferase protein, putative, expressed
 
-6
 
-3
 
-9
 
2
 
2
LOC_Os01g02940 glycosyltransferase protein, putative, expressed
 
2
 
2
-
 
5
 
-1
LOC_Os01g02920 glycosyltransferase protein, putative, expressed
 
1
 
2
 
-7
 
2
 
1
LOC_Os01g02910 glycosyltransferase, putative, expressed
 
5
 
-2
 
2
 
2
 
1
LOC_Os01g02900 glycosyltransferase, putative, expressed
 
3
 
3
 
-103
 
4
 
1
LOC_Os01g02884 ATP-dependent RNA helicase DHX36, putative, expressed
 
2
 
-2
 
3
 
3
 
1
LOC_Os01g02890 phosphatidylserine synthase, putative -
 
-1
 
-16
-
 
1
LOC_Os01g02880 fructose-bisphospate aldolase isozyme, putative, expressed
 
2
 
1
 
1
 
3
 
2
LOC_Os01g02860 expressed protein
 
-1
 
-2
 
6
 
3
 
1
LOC_Os01g02870 auxin-induced protein 5NG4, putative, expressed
 
3
 
-2
 
22
 
3
 
1
LOC_Os01g02840 resistance-related receptor-like kinase, putative
 
3
 
-1
 
2
 
3
 
-1
LOC_Os01g02850 hypothetical protein
 
1
 
1
-
 
1
 
-3
LOC_Os01g02830 receptor-like kinase ARK1AS, putative, expressed
 
2
 
-3
 
3
 
6
 
-3
LOC_Os01g02790 protein kinase domain containing protein, expressed
 
-1
 
1
- - -
LOC_Os01g02800 receptor-like kinase ARK1AS, putative, expressed
 
2
 
-3
-
 
-1
 
-1
LOC_Os01g02810 resistance-related receptor-like kinase, putative
 
2
 
7
 
1
-
 
-1
LOC_Os01g02780 TAK33, putative, expressed
 
-1
 
1
 
1
- -
LOC_Os01g02760 receptor-like kinase, putative, expressed
 
-1
 
-2
 
4
 
2
 
1
LOC_Os01g02770 resistance-related receptor-like kinase, putative, expressed
 
1
 
-2
 
8
 
2
 
-2
LOC_Os01g02750 protein kinase domain containing protein, expressed
 
-1
 
4
 
5
 
2
 
-3
LOC_Os01g02740 retrotransposon protein, putative, unclassified - - - - -
osa-MIR1860
LOC_Os01g02730 TAK14, putative, expressed
 
2
 
2
 
5
-
 
1
LOC_Os01g02710 LRk-type protein, putative
 
-2
 
6
-
 
-1
 
-2
LOC_Os01g02720 elongation factor Tu, putative, expressed
 
2
 
4
 
1
 
2
 
-1
LOC_Os01g02700 protein kinase domain containing protein, expressed
 
-2
 
-4
 
15
 
1
 
2
LOC_Os01g02690 resistance-related receptor-like kinase, putative
 
-2
 
-1
 
-1
 
6
 
1
LOC_Os01g02680 protein kinase domain containing protein, expressed
 
-1
 
2
 
1
 
-2
 
2
LOC_Os01g02660 retrotransposon protein, putative, unclassified - - - - -
LOC_Os01g02670 retrotransposon protein, putative, Ty1-copia subclass, expressed - - - - -
LOC_Os01g02650 retrotransposon protein, putative, unclassified - - - - -
LOC_Os01g02629 retrotransposon protein, putative, unclassified - - - - -
LOC_Os01g02610 protein kinase domain containing protein
 
3
 
-2
 
1
 
2
 
1
LOC_Os01g02600 Ser/Thr receptor-like kinase, putative, expressed
 
3
 
5
 
7
 
2
 
-1
LOC_Os01g02590 receptor-like kinase, putative, expressed
 
3
 
-1
 
3
 
1
 
-1
LOC_Os01g02580 protein kinase domain containing protein
 
1
 
-2
 
-7
 
-1
 
2
LOC_Os01g02560 Ser/Thr receptor-like kinase, putative, expressed
 
1
 
2
 
3
 
-1
 
1
LOC_Os01g02570 protein kinase domain containing protein, expressed
 
2
 
-1
 
26
 
-1
 
-2
LOC_Os01g02550 protein kinase domain containing protein, expressed
 
1
 
1
 
1
 
1
-
osa-MIR531b
LOC_Os01g02540 retrotransposon protein, putative, unclassified - - - - -
LOC_Os01g02530 retrotransposon protein, putative, unclassified, expressed - - - - -
LOC_Os01g02520 retrotransposon protein, putative, unclassified - - - - -
LOC_Os01g02500 glutamyl-tRNA amidotransferase, putative
 
2
 
1
 
1
 
4
 
-1
LOC_Os01g02510 retrotransposon protein, putative, unclassified, expressed - - - - -
LOC_Os01g02490 expressed protein
 
2
 
-2
 
28
 
1
 
-1
LOC_Os01g02480 retrotransposon protein, putative, unclassified - - - - -
LOC_Os01g02470 conserved hypothetical protein
 
3
 
3
 
2
 
-2
 
-2
LOC_Os01g02460 receptor kinase LRK10, putative
 
3
- -
 
-1
 
-4
LOC_Os01g02440 Ser/Thr receptor-like kinase, putative, expressed
 
1
 
1
-
 
-2
 
1
LOC_Os01g02450 retrotransposon protein, putative, unclassified - - - - -
LOC_Os01g02420 protein kinase domain containing protein
 
1
 
1
 
2
-
 
-1
LOC_Os01g02430 TAK14, putative, expressed
 
-6
-
 
1
 
-1
 
3
LOC_Os01g02410 protein kinase domain containing protein
 
1
 
1
 
1
 
1
 
1
LOC_Os01g02380 retrotransposon protein, putative, Ty3-gypsy subclass - - - - -
LOC_Os01g02390 protein kinase domain containing protein, expressed
 
1
 
-2
 
1
 
1
 
-1
LOC_Os01g02400 protein kinase domain containing protein, expressed
 
2
 
7
 
5
 
-1
 
1
LOC_Os01g02360 resistance-related receptor-like kinase, putative, expressed
 
3
 
2
 
-2
 
3
 
-1
LOC_Os01g02370 receptor-like kinase ARK1AS, putative, expressed
 
1
 
-2
-
 
2
-
LOC_Os01g02334 expressed protein
 
-1
 
1
 
-2
 
1
 
1
LOC_Os01g02350 receptor-like kinase ARK1AS, putative, expressed
 
2
 
1
 
-4
 
3
 
-1
LOC_Os01g02320 protein kinase domain containing protein, expressed
 
2
 
-2
 
1
 
12
 
-1
LOC_Os01g02300 receptor kinase ORK10, putative, expressed
 
2
 
-1
 
-3
 
3
 
1
LOC_Os01g02310 expressed protein
 
1
 
-1
 
-2
 
4
 
2
LOC_Os01g02280 Leucine Rich Repeat family protein
 
1
 
1
- - -
LOC_Os01g02290 Ser/Thr receptor-like kinase, putative, expressed
 
1
 
-1
 
-2
 
3
 
1
LOC_Os01g02270 conserved hypothetical protein -
 
-9
 
16
 
-1
 
2
LOC_Os01g02260 retrotransposon protein, putative, Ty3-gypsy subclass - - - - -
LOC_Os01g02230 retrotransposon protein, putative, Ty3-gypsy subclass - - - - -
osa-MIR1859
LOC_Os01g02240 transposon protein, putative, unclassified - - - - -
LOC_Os01g02250 RGA-1, putative
 
1
 
1
 
1
-
 
-3
LOC_Os01g02220 retrotransposon protein, putative, Ty3-gypsy subclass - - - - -
LOC_Os01g02210 retrotransposon protein, putative, Ty3-gypsy subclass - - - - -
LOC_Os01g02200 armadillo/beta-catenin repeat family protein, putative, expressed
 
-1
 
2
 
-1
 
-1
 
1
LOC_Os01g02190 aquaporin protein, putative, expressed
 
1
-
 
-1
-
 
2
LOC_Os01g02180 expressed protein
 
1
 
1
 
1
 
-5
 
1
LOC_Os01g02170 expressed protein
 
1
 
1
 
5
 
5
 
1
LOC_Os01g02160 hydroxyproline-rich glycoprotein family protein, putative, expressed -
 
-8
-
 
1
 
1
LOC_Os01g02150 sulfated surface glycoprotein 185 precursor, putative, expressed
 
-3
 
-3
 
-3
 
2
 
2
LOC_Os01g02139 expressed protein
 
1
 
-1
 
-1
 
1
 
2
LOC_Os01g02120 osMFT2 MFT-Like2 homologous to Mother of FT and TFL1 gene; contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed
 
1
 
1
 
-2
 
1
 
1
LOC_Os01g02130 expressed protein
 
3
 
3
 
-3
 
2
 
-2
LOC_Os01g02110 helix-loop-helix DNA-binding domain containing protein, expressed
 
1
-
 
-8
 
1
 
1
LOC_Os01g02100 transposon protein, putative, unclassified, expressed - - - - -
LOC_Os01g02090 expressed protein
 
1
 
-1
 
1
 
2
 
1
LOC_Os01g02070 invertase/pectin methylesterase inhibitor family protein, putative
 
1
- -
 
1
 
-1
LOC_Os01g02080 peptidyl-prolyl cis-trans isomerase, putative, expressed
 
-2
 
1
 
-3
 
3
 
1
LOC_Os01g02060 TOO MANY MOUTHS precursor, putative, expressed
 
5
 
-1
-
 
2
 
-1
LOC_Os01g02050 phosphoenolpyruvate carboxylase, putative, expressed
 
2
 
-2
 
-2
 
2
 
-2
LOC_Os01g02040 retrotransposon protein, putative, unclassified, expressed - - - - -
LOC_Os01g02010 expressed protein
 
-1
 
-3
 
3
 
21
 
5
LOC_Os01g02020 acetyl-CoA acetyltransferase, cytosolic, putative, expressed
 
2
 
3
 
1
 
2
 
1
LOC_Os01g02000 phosphate transporter 1, putative, expressed
 
1
 
-2
 
39
 
2
 
-1
LOC_Os01g01990 expressed protein
 
1
 
-2
 
1
 
1
 
1
LOC_Os01g01970 expressed protein
 
3
 
2
 
2
 
2
 
2
LOC_Os01g01980 hypothetical protein
 
1
 
-7
-
 
1
 
-2
LOC_Os01g01960 transcriptional repressor, putative, expressed
 
1
 
-2
 
1
 
3
 
-1
LOC_Os01g01950 hypothetical protein -
 
-1
 
13
 
1
 
3
LOC_Os01g01940 expressed protein
 
1
 
-2
 
5
 
5
 
1
LOC_Os01g01930 hypothetical protein
 
-2
 
-1
 
12
 
4
 
-1
LOC_Os01g01925 expressed protein
 
-2
 
2
 
1
 
2
 
-1
LOC_Os01g01910 hypothetical protein
 
2
 
-2
 
3
 
2
 
-1
LOC_Os01g01920 HD domain containing protein 2, putative, expressed
 
2
 
2
 
3
 
1
 
-1
LOC_Os01g01900 retrotransposon protein, putative, unclassified - - - - -
LOC_Os01g01890 expressed protein
 
-1
 
3
 
-11
-
 
-1
LOC_Os01g01880 expressed protein
 
1
- -
 
1
 
-1
LOC_Os01g01870 helix-loop-helix DNA-binding domain containing protein, expressed
 
1
 
-1
 
1
 
2
 
4
LOC_Os01g01860 transposon protein, putative, unclassified - - - - -
LOC_Os01g01840 helix-loop-helix DNA-binding domain containing protein, expressed
 
1
- -
 
3
 
-4
LOC_Os01g01850 transposon protein, putative, unclassified - - - - -
LOC_Os01g01830 OsPOP1 - Putative Prolyl Oligopeptidase homologue, expressed
 
1
 
-2
 
1
 
3
 
-1
LOC_Os01g01810 hypothetical protein
 
1
 
1
-
 
1
 
1
LOC_Os01g01800 expressed protein
 
1
 
-2
 
2
 
2
 
1
LOC_Os01g01790 expressed protein
 
-1
 
-1
 
2
 
2
 
-1
LOC_Os01g01770 ZOS1-01 - C2H2 zinc finger protein
 
-6
 
-5
 
1
 
3
 
-1
LOC_Os01g01780 exostosin family protein, putative, expressed
 
-2
 
-1
 
3
 
2
 
1
LOC_Os01g01760 conserved hypothetical protein
 
2
 
2
 
2
- -
LOC_Os01g01730 serine/arginine repetitive matrix protein 2, putative
 
1
- -
 
1
 
-1
LOC_Os01g01740 protein kinase domain containing protein, expressed
 
-2
 
-4
 
-2
 
3
 
-1
LOC_Os01g01720 pex14, putative, expressed
 
-1
 
1
 
1
 
1
 
1
LOC_Os01g01710 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplast precursor, putative, expressed
 
2
 
1
 
2
 
1
 
-1
LOC_Os01g01680 expressed protein
 
2
 
-1
 
9
 
2
 
1
LOC_Os01g01689 phosphatidylinositol 3- and 4-kinase family protein, expressed
 
2
 
-3
 
2
 
6
 
-1
LOC_Os01g01700 anaphase-promoting complex subunit 11, putative, expressed
 
-1
 
1
 
2
 
2
 
1
LOC_Os01g01670 expressed protein
 
-1
 
1
 
12
 
1
 
1
LOC_Os01g01660 isoflavone reductase, putative, expressed
 
-1
 
-4
 
2
 
2
 
2
LOC_Os01g01650 isoflavone reductase homolog IRL, putative, expressed
 
1
 
-3
 
-4
-
 
2
LOC_Os01g01640 Rer1 protein, putative, expressed
 
-1
 
-1
 
-2
 
2
 
2
LOC_Os01g01610 IscA-like iron-sulfur assembly protein, mitochondrial precursor, putative, expressed
 
2
 
4
 
8
 
2
 
1
LOC_Os01g01620 kinase, pfkB family, putative, expressed
 
1
 
-2
 
-3
 
1
 
1
LOC_Os01g01590 expressed protein
 
1
 
1
- -
 
3
LOC_Os01g01600 ethylene-responsive protein related, putative, expressed -
 
-1
 
7
 
2
 
1
LOC_Os01g01580 expressed protein
 
1
 
-2
- -
 
2
LOC_Os01g01570 kinesin heavy chain, putative, expressed
 
1
 
1
 
1
 
1
 
-1
LOC_Os01g01540 retrotransposon protein, putative, unclassified - - - - -
LOC_Os01g01550 transposon protein, putative, CACTA, En/Spm sub-class - - - - -
LOC_Os01g01560 transposon protein, putative, unclassified, expressed - - - - -
LOC_Os01g01520 transferase family protein, putative, expressed
 
-3
 
-4
 
5
 
11
 
-1
LOC_Os01g01530 transposon protein, putative, CACTA, En/Spm sub-class - - - - -
LOC_Os01g01510 sas10/Utp3 family protein, expressed
 
1
 
-1
 
6
 
2
 
1
LOC_Os01g01500 conserved hypothetical protein
 
1
 
1
 
1
 
1
 
1
LOC_Os01g01484 light-mediated development protein DET1, putative, expressed
 
2
 
1
 
9
 
2
 
1
LOC_Os01g01470 no apical meristem protein, putative, expressed
 
1
 
2
-
 
1
-
LOC_Os01g01460 retrotransposon protein, putative, Ty3-gypsy subclass - - - - -
LOC_Os01g01450 stress responsive protein, putative, expressed
 
-1
 
-1
 
1
 
1
 
-2
LOC_Os01g01440 conserved hypothetical protein
 
-5
 
-2
 
1
 
1
 
1
LOC_Os01g01430 No apical meristem protein, putative, expressed
 
2
-
 
-10
 
4
 
-2
LOC_Os01g01420 expressed protein
 
-1
 
1
 
1
 
2
 
1
LOC_Os01g01410 TKL_IRAK_C-LEC.1 - TKL_IRAK_C-LEC has homology to C-type lectin receptors, expressed
 
1
 
1
 
4
 
3
 
-1
LOC_Os01g01400 expressed protein
 
1
 
2
 
2
 
-2
 
-1
2 Chr1
AQDY001culm length
AQDY002culm length
 647235 :1405165 LOC_Os01g03480 expressed protein
 
3
 
-3
 
9
 
2
 
3
LOC_Os01g03464 conserved hypothetical protein
 
5
 
-1
 
1
-
 
-4
LOC_Os01g03452 transposon protein, putative, unclassified - - - - -
LOC_Os01g03440 transposon protein, putative, unclassified - - - - -
LOC_Os01g03429 conserved hypothetical protein -
 
2
 
1
- -
LOC_Os01g03410 ubiquitin, putative
 
3
 
1
 
7
 
1
 
1
LOC_Os01g03420 seven in absentia protein family protein, putative
 
1
-
 
1
 
1
 
1
LOC_Os01g03400 E3 ubiquitin-protein ligase SINA-like 2, putative -
 
1
 
10
 
1
 
1
LOC_Os01g03380 BBTI6 - Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
 
1
 
2
-
 
1
 
1
LOC_Os01g03390 BBTI7 - Bowman-Birk type bran trypsin inhibitor precursor, expressed
 
3
 
11
 
2
 
2
 
-1
LOC_Os01g03370 senescence-induced receptor-like serine/threonine-protein kinase precursor, putative
 
1
-
 
-30
 
1
 
1
LOC_Os01g03360 BBTI5 - Bowman-Birk type bran trypsin inhibitor precursor, expressed
 
2
 
2
 
1
-
 
4
LOC_Os01g03340 BBTI4 - Bowman-Birk type bran trypsin inhibitor precursor, expressed
 
6
 
4
 
-10
 
-2
 
2
LOC_Os01g03350 conserved hypothetical protein
 
1
-
 
1
 
1
 
1
LOC_Os01g03330 BBTI3 - Bowman-Birk type bran trypsin inhibitor precursor, expressed
 
10
 
9
 
-18
 
1
 
-1
LOC_Os01g03320 BBTI2 - Bowman-Birk type bran trypsin inhibitor precursor, expressed
 
2
 
2
 
2
 
-4
 
-2
LOC_Os01g03310 BBTI1 - Bowman-Birk type bran trypsin inhibitor precursor, expressed
 
1
 
-2
 
2
 
-1
 
-3
LOC_Os01g03300 seven in absentia protein family protein
 
-1
 
-2
- -
 
2
LOC_Os01g03280 hypothetical protein
 
1
 
1
 
1
 
1
 
2
LOC_Os01g03290 seven in absentia protein family domain containing protein
 
1
 
1
 
1
 
-4
 
-2
LOC_Os01g03270 conserved hypothetical protein
 
1
-
 
1
 
1
 
-2
LOC_Os01g03260 hypothetical protein -
 
-3
 
2
 
1
 
2
LOC_Os01g03250 hypothetical protein
 
1
 
1
 
1
 
1
 
1
LOC_Os01g03240 conserved hypothetical protein - -
 
1
-
 
-3
LOC_Os01g03220 hypothetical protein
 
1
 
-6
 
1
 
1
-
LOC_Os01g03230 retrotransposon protein, putative, unclassified, expressed - - - - -
LOC_Os01g03210 conserved hypothetical protein
 
1
 
1
 
1
 
1
-
LOC_Os01g03200 retrotransposon protein, putative, Ty1-copia subclass, expressed - - - - -
LOC_Os01g03190 expressed protein
 
1
 
-1
 
1
 
1
 
-1
LOC_Os01g03180 retrotransposon protein, putative, unclassified, expressed - - - - -
LOC_Os01g03160 xylosyltransferase, putative, expressed
 
-1
 
-1
 
-1
 
2
 
2
LOC_Os01g03170 seven in absentia protein family protein, expressed
 
1
 
-1
 
-1
 
2
 
1
LOC_Os01g03144 white-brown complex homolog protein 7, putative, expressed
 
1
 
2
 
-1
 
2
 
1
osa-MIR159b
LOC_Os01g03130 expressed protein
 
2
 
1
 
-12
 
3
 
7
LOC_Os01g03100 protein binding protein, putative, expressed
 
1
 
1
 
-1
 
-2
 
-1
LOC_Os01g03110 expressed protein
 
1
 
-1
 
1
 
2
 
1
LOC_Os01g03080 expressed protein
 
1
 
2
 
-3
-
 
-1
LOC_Os01g03090 methyltransferase, putative, expressed
 
-1
 
1
 
-1
 
1
 
1
LOC_Os01g03070 transposon protein, putative, unclassified, expressed - - - - -
LOC_Os01g03060 splicing factor, putative, expressed
 
-1
 
-2
 
2
 
2
 
3
LOC_Os01g03050 fruit protein PKIWI502, putative, expressed
 
3
 
-2
 
-1
 
2
 
-1
LOC_Os01g03030 alanyl-tRNA synthetase, putative, expressed
 
2
 
2
 
-1
 
2
 
1
LOC_Os01g03040 expressed protein
 
1
 
4
 
26
 
2
 
1
LOC_Os01g03020 tRNA synthetase class I, putative, expressed
 
1
 
-1
 
5
 
2
 
-1
LOC_Os01g02990 hypothetical protein
 
1
 
1
-
 
1
-
LOC_Os01g03010 hypothetical protein
 
1
 
1
 
1
 
1
 
1
LOC_Os01g02970 retrotransposon protein, putative, unclassified - - - - -
LOC_Os01g02980 hypothetical protein
 
1
 
1
 
5
 
1
 
-2
LOC_Os01g02960 expressed protein
 
1
 
-1
 
2
 
3
 
1
LOC_Os01g02950 hypothetical protein
 
1
 
-4
-
 
1
 
-2
LOC_Os01g02940 glycosyltransferase protein, putative, expressed
 
2
 
2
-
 
5
 
-1
LOC_Os01g02930 glycosyltransferase protein, putative, expressed
 
-6
 
-3
 
-9
 
2
 
2
LOC_Os01g02920 glycosyltransferase protein, putative, expressed
 
1
 
2
 
-7
 
2
 
1
LOC_Os01g02910 glycosyltransferase, putative, expressed
 
5
 
-2
 
2
 
2
 
1
LOC_Os01g02900 glycosyltransferase, putative, expressed
 
3
 
3
 
-103
 
4
 
1
LOC_Os01g02890 phosphatidylserine synthase, putative -
 
-1
 
-16
-
 
1
LOC_Os01g02884 ATP-dependent RNA helicase DHX36, putative, expressed
 
2
 
-2
 
3
 
3
 
1
LOC_Os01g02880 fructose-bisphospate aldolase isozyme, putative, expressed
 
2
 
1
 
1
 
3
 
2
LOC_Os01g02870 auxin-induced protein 5NG4, putative, expressed
 
3
 
-2
 
22
 
3
 
1
LOC_Os01g02860 expressed protein
 
-1
 
-2
 
6
 
3
 
1
LOC_Os01g02850 hypothetical protein
 
1
 
1
-
 
1
 
-3
LOC_Os01g02840 resistance-related receptor-like kinase, putative
 
3
 
-1
 
2
 
3
 
-1
LOC_Os01g02830 receptor-like kinase ARK1AS, putative, expressed
 
2
 
-3
 
3
 
6
 
-3
LOC_Os01g02780 TAK33, putative, expressed
 
-1
 
1
 
1
- -
LOC_Os01g02790 protein kinase domain containing protein, expressed
 
-1
 
1
- - -
LOC_Os01g02800 receptor-like kinase ARK1AS, putative, expressed
 
2
 
-3
-
 
-1
 
-1
LOC_Os01g02810 resistance-related receptor-like kinase, putative
 
2
 
7
 
1
-
 
-1
LOC_Os01g02770 resistance-related receptor-like kinase, putative, expressed
 
1
 
-2
 
8
 
2
 
-2
LOC_Os01g02760 receptor-like kinase, putative, expressed
 
-1
 
-2
 
4
 
2
 
1
LOC_Os01g02750 protein kinase domain containing protein, expressed
 
-1
 
4
 
5
 
2
 
-3
osa-MIR1860
LOC_Os01g02730 TAK14, putative, expressed
 
2
 
2
 
5
-
 
1
LOC_Os01g02740 retrotransposon protein, putative, unclassified - - - - -
LOC_Os01g02710 LRk-type protein, putative
 
-2
 
6
-
 
-1
 
-2
LOC_Os01g02720 elongation factor Tu, putative, expressed
 
2
 
4
 
1
 
2
 
-1
LOC_Os01g02690 resistance-related receptor-like kinase, putative
 
-2
 
-1
 
-1
 
6
 
1
LOC_Os01g02700 protein kinase domain containing protein, expressed
 
-2
 
-4
 
15
 
1
 
2
LOC_Os01g02680 protein kinase domain containing protein, expressed
 
-1
 
2
 
1