<-50 |
-10-
-49 |
-5 - -9 |
-4 |
-3 |
-2 |
-1 |
0 |
1 |
2 |
3 |
4 |
5 |
6 |
7 |
8 |
9 |
10-
19 |
20-
29 |
30-
39 |
40-
49 |
50-
99
|
100-
999 |
1000-
4999 |
>5000 |
|
|
|
Link to Manually Curated Database of Rice Proteins Link to DNA Sequence |
|
S. No. |
QTL |
Nipponbare(Protein LOC/miRNA) |
N22
RNA-Seq |
IR64
RNA-Seq |
Gene Sequence |
Chr.No. |
QTL ID |
QTL Associated Trait |
Coord.
start |
Coord.
end |
ID |
Description |
Flag-
leafS |
Inflo
resence |
Root |
Flag-
leaf |
Inflo
resence |
Anjali |
IR64 |
N22 |
PB1 |
Vandana |
FC |
FC |
FC |
FC |
FC |
1 |
Chr1
|
AQAF001 | blast disease resistance | AQAF002 | blast disease resistance | AQAF003 | blast disease resistance | AQAI052 | large vascular bundle number to leaf area ratio | AQCQ001 | grain yield per plant | AQCQ009 | grain number | AQCQ014 | 1000-seed weight | AQCQ021 | grain yield per plant | AQCQ036 | 1000-seed weight | AQGI036 | root dry weight | AQGI132 | biomass yield | AQGI161 | biomass yield | AQGI197 | total biomass yield | AQGI217 | total biomass yield | CQAL26 | grain width | CQAL3 | grain width | CQAL7 | chalkiness of endosperm | |
198822
:1891260
|
LOC_Os01g04250
|
expressed protein |
|
|
-
|
-
|
-
|
|
|
|
|
 |
LOC_Os01g04220
|
DNA binding protein, putative |
|
-
|
|
|
|
|
|
|
|
 |
LOC_Os01g04230
|
inactive receptor kinase At2g26730 precursor, putative, expressed |
-
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g04210
|
DNA binding protein, putative |
-
|
|
|
-
|
|
|
|
|
|
 |
LOC_Os01g04200
|
metallo-beta-lactamase family protein, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g04190
|
transporter family protein, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g04180
|
retrotransposon protein, putative, unclassified |
-
|
-
|
-
|
-
|
-
|
|
|
|
|
 |
LOC_Os01g04160
|
expressed protein |
-
|
|
|
-
|
|
|
|
|
|
 |
LOC_Os01g04170
|
expressed protein |
-
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g04150
|
transposon protein, putative, CACTA, En/Spm sub-class |
-
|
-
|
-
|
-
|
-
|
|
|
|
|
 |
LOC_Os01g04140
|
transposon protein, putative, CACTA, En/Spm sub-class |
-
|
-
|
-
|
-
|
-
|
|
|
|
|
 |
LOC_Os01g04130
|
peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g04120
|
ZOS1-03 - C2H2 zinc finger protein, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g04110
|
mediator of RNA polymerase II transcription subunit 22, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g04100
|
expressed protein |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g04090
|
expressed protein |
|
|
-
|
|
|
|
|
|
|
 |
LOC_Os01g04080
|
expressed protein |
-
|
|
|
|
|
|
|
|
|
 |
osa-MIR5824
|
|
|
|
|
|
|
LOC_Os01g04070
|
verticillium wilt disease resistance protein, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g04050
|
BBTI12 - Bowman-Birk type bran trypsin inhibitor precursor, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g04040
|
BBTI11 - Bowman-Birk type bran trypsin inhibitor precursor, putative |
|
|
|
-
|
|
|
|
|
|
 |
LOC_Os01g04030
|
signal peptidase complex subunit 3, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g04020
|
AP2 domain containing protein, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g04005
|
expressed protein |
|
-
|
|
|
-
|
|
|
|
|
 |
LOC_Os01g04010
|
expressed protein |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03989
|
hypothetical protein |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g04000
|
hypothetical protein |
|
|
-
|
|
|
|
|
|
|
 |
LOC_Os01g03980
|
expressed protein |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03970
|
hypothetical protein |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03960
|
hypothetical protein |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03930
|
hypothetical protein |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03940
|
expressed protein |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03950
|
glycosyl hydrolase, family 31, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03900
|
expressed protein |
|
|
-
|
-
|
|
|
|
|
|
 |
LOC_Os01g03914
|
cation efflux family protein, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03890
|
DUF260 domain containing protein, putative, expressed |
|
|
|
-
|
|
|
|
|
|
 |
LOC_Os01g03880
|
retrotransposon protein, putative, Ty3-gypsy subclass |
-
|
-
|
-
|
-
|
-
|
|
|
|
|
 |
LOC_Os01g03870
|
expressed protein |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03840
|
ZOS1-02 - C2H2 zinc finger protein, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03860
|
retrotransposon protein, putative, unclassified |
-
|
-
|
-
|
-
|
-
|
|
|
|
|
 |
LOC_Os01g03830
|
retrotransposon protein, putative, unclassified |
-
|
-
|
-
|
-
|
-
|
|
|
|
|
 |
LOC_Os01g03820
|
C2 domain containing protein, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03810
|
expressed protein |
|
-
|
|
|
|
|
|
|
|
 |
LOC_Os01g03780
|
retrotransposon protein, putative, unclassified |
-
|
-
|
-
|
-
|
-
|
|
|
|
|
 |
LOC_Os01g03790
|
retrotransposon protein, putative, unclassified |
-
|
-
|
-
|
-
|
-
|
|
|
|
|
 |
LOC_Os01g03800
|
transposon protein, putative, Mutator sub-class |
-
|
-
|
-
|
-
|
-
|
|
|
|
|
 |
LOC_Os01g03770
|
hypothetical protein |
|
|
|
|
-
|
|
|
|
|
 |
LOC_Os01g03760
|
expressed protein |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03730
|
nuclease PA3, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03750
|
expressed protein |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03720
|
MYB family transcription factor, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03740
|
nuclease PA3, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03710
|
mannose-6-phosphate isomerase, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03690
|
TKL_IRAK_DUF26-lg.1 - DUF26 kinases have homology to DUF26 containing loci, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03670
|
dihydroflavonol-4-reductase, putative, expressed |
|
|
-
|
-
|
|
|
|
|
|
 |
LOC_Os01g03680
|
BBTI8 - Bowman-Birk type bran trypsin inhibitor precursor, expressed |
|
|
|
|
-
|
|
|
|
|
 |
LOC_Os01g03660
|
MYB family transcription factor, putative, expressed |
-
|
-
|
-
|
-
|
-
|
|
|
|
|
 |
LOC_Os01g03650
|
sufB/sufD domain containing protein, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03640
|
multicopper oxidase domain containing protein, expressed |
|
|
|
-
|
|
|
|
|
|
 |
LOC_Os01g03630
|
multicopper oxidase domain containing protein, expressed |
|
|
-
|
-
|
-
|
|
|
|
|
 |
LOC_Os01g03610
|
retrotransposon protein, putative, unclassified |
-
|
-
|
-
|
-
|
-
|
|
|
|
|
 |
LOC_Os01g03620
|
multicopper oxidase domain containing protein, expressed |
-
|
|
-
|
-
|
|
|
|
|
|
 |
LOC_Os01g03600
|
retrotransposon protein, putative, Ty3-gypsy subclass |
-
|
-
|
-
|
-
|
-
|
|
|
|
|
 |
LOC_Os01g03570
|
transcription factor X1, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03580
|
transposon protein, putative, CACTA, En/Spm sub-class |
-
|
-
|
-
|
-
|
-
|
|
|
|
|
 |
LOC_Os01g03590
|
transposon protein, putative, CACTA, En/Spm sub-class |
-
|
-
|
-
|
-
|
-
|
|
|
|
|
 |
LOC_Os01g03549
|
multi-copper oxidase type I family protein, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03530
|
multicopper oxidase domain containing protein, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03520
|
ubiquitin conjugating enzyme protein, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03500
|
expressed protein |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03510
|
WD domain, G-beta repeat domain containing protein, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03490
|
heavy-metal-associated domain-containing protein, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03480
|
expressed protein |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03464
|
conserved hypothetical protein |
|
|
|
-
|
|
|
|
|
|
 |
LOC_Os01g03440
|
transposon protein, putative, unclassified |
-
|
-
|
-
|
-
|
-
|
|
|
|
|
 |
LOC_Os01g03452
|
transposon protein, putative, unclassified |
-
|
-
|
-
|
-
|
-
|
|
|
|
|
 |
LOC_Os01g03429
|
conserved hypothetical protein |
-
|
|
|
-
|
-
|
|
|
|
|
 |
LOC_Os01g03420
|
seven in absentia protein family protein, putative |
|
-
|
|
|
|
|
|
|
|
 |
LOC_Os01g03410
|
ubiquitin, putative |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03390
|
BBTI7 - Bowman-Birk type bran trypsin inhibitor precursor, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03400
|
E3 ubiquitin-protein ligase SINA-like 2, putative |
-
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03380
|
BBTI6 - Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed |
|
|
-
|
|
|
|
|
|
|
 |
LOC_Os01g03370
|
senescence-induced receptor-like serine/threonine-protein kinase precursor, putative |
|
-
|
|
|
|
|
|
|
|
 |
LOC_Os01g03360
|
BBTI5 - Bowman-Birk type bran trypsin inhibitor precursor, expressed |
|
|
|
-
|
|
|
|
|
|
 |
LOC_Os01g03340
|
BBTI4 - Bowman-Birk type bran trypsin inhibitor precursor, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03350
|
conserved hypothetical protein |
|
-
|
|
|
|
|
|
|
|
 |
LOC_Os01g03330
|
BBTI3 - Bowman-Birk type bran trypsin inhibitor precursor, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03320
|
BBTI2 - Bowman-Birk type bran trypsin inhibitor precursor, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03300
|
seven in absentia protein family protein |
|
|
-
|
-
|
|
|
|
|
|
 |
LOC_Os01g03310
|
BBTI1 - Bowman-Birk type bran trypsin inhibitor precursor, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03290
|
seven in absentia protein family domain containing protein |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03280
|
hypothetical protein |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03240
|
conserved hypothetical protein |
-
|
-
|
|
-
|
|
|
|
|
|
 |
LOC_Os01g03250
|
hypothetical protein |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03260
|
hypothetical protein |
-
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03270
|
conserved hypothetical protein |
|
-
|
|
|
|
|
|
|
|
 |
LOC_Os01g03230
|
retrotransposon protein, putative, unclassified, expressed |
-
|
-
|
-
|
-
|
-
|
|
|
|
|
 |
LOC_Os01g03220
|
hypothetical protein |
|
|
|
|
-
|
|
|
|
|
 |
LOC_Os01g03210
|
conserved hypothetical protein |
|
|
|
|
-
|
|
|
|
|
 |
LOC_Os01g03200
|
retrotransposon protein, putative, Ty1-copia subclass, expressed |
-
|
-
|
-
|
-
|
-
|
|
|
|
|
 |
LOC_Os01g03190
|
expressed protein |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03180
|
retrotransposon protein, putative, unclassified, expressed |
-
|
-
|
-
|
-
|
-
|
|
|
|
|
 |
LOC_Os01g03160
|
xylosyltransferase, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03170
|
seven in absentia protein family protein, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03144
|
white-brown complex homolog protein 7, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
osa-MIR159b
|
|
|
|
|
|
|
LOC_Os01g03130
|
expressed protein |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03110
|
expressed protein |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03100
|
protein binding protein, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03080
|
expressed protein |
|
|
|
-
|
|
|
|
|
|
 |
LOC_Os01g03090
|
methyltransferase, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03070
|
transposon protein, putative, unclassified, expressed |
-
|
-
|
-
|
-
|
-
|
|
|
|
|
 |
LOC_Os01g03050
|
fruit protein PKIWI502, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03060
|
splicing factor, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03040
|
expressed protein |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03030
|
alanyl-tRNA synthetase, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03010
|
hypothetical protein |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03020
|
tRNA synthetase class I, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02970
|
retrotransposon protein, putative, unclassified |
-
|
-
|
-
|
-
|
-
|
|
|
|
|
 |
LOC_Os01g02980
|
hypothetical protein |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02990
|
hypothetical protein |
|
|
-
|
|
-
|
|
|
|
|
 |
LOC_Os01g02960
|
expressed protein |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02950
|
hypothetical protein |
|
|
-
|
|
|
|
|
|
|
 |
LOC_Os01g02930
|
glycosyltransferase protein, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02940
|
glycosyltransferase protein, putative, expressed |
|
|
-
|
|
|
|
|
|
|
 |
LOC_Os01g02920
|
glycosyltransferase protein, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02910
|
glycosyltransferase, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02900
|
glycosyltransferase, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02884
|
ATP-dependent RNA helicase DHX36, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02890
|
phosphatidylserine synthase, putative |
-
|
|
|
-
|
|
|
|
|
|
 |
LOC_Os01g02880
|
fructose-bisphospate aldolase isozyme, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02860
|
expressed protein |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02870
|
auxin-induced protein 5NG4, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02840
|
resistance-related receptor-like kinase, putative |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02850
|
hypothetical protein |
|
|
-
|
|
|
|
|
|
|
 |
LOC_Os01g02830
|
receptor-like kinase ARK1AS, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02790
|
protein kinase domain containing protein, expressed |
|
|
-
|
-
|
-
|
|
|
|
|
 |
LOC_Os01g02800
|
receptor-like kinase ARK1AS, putative, expressed |
|
|
-
|
|
|
|
|
|
|
 |
LOC_Os01g02810
|
resistance-related receptor-like kinase, putative |
|
|
|
-
|
|
|
|
|
|
 |
LOC_Os01g02780
|
TAK33, putative, expressed |
|
|
|
-
|
-
|
|
|
|
|
 |
LOC_Os01g02760
|
receptor-like kinase, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02770
|
resistance-related receptor-like kinase, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02750
|
protein kinase domain containing protein, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02740
|
retrotransposon protein, putative, unclassified |
-
|
-
|
-
|
-
|
-
|
|
|
|
|
 |
osa-MIR1860
|
|
|
|
|
|
|
LOC_Os01g02730
|
TAK14, putative, expressed |
|
|
|
-
|
|
|
|
|
|
 |
LOC_Os01g02710
|
LRk-type protein, putative |
|
|
-
|
|
|
|
|
|
|
 |
LOC_Os01g02720
|
elongation factor Tu, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02700
|
protein kinase domain containing protein, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02690
|
resistance-related receptor-like kinase, putative |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02680
|
protein kinase domain containing protein, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02660
|
retrotransposon protein, putative, unclassified |
-
|
-
|
-
|
-
|
-
|
|
|
|
|
 |
LOC_Os01g02670
|
retrotransposon protein, putative, Ty1-copia subclass, expressed |
-
|
-
|
-
|
-
|
-
|
|
|
|
|
 |
LOC_Os01g02650
|
retrotransposon protein, putative, unclassified |
-
|
-
|
-
|
-
|
-
|
|
|
|
|
 |
LOC_Os01g02629
|
retrotransposon protein, putative, unclassified |
-
|
-
|
-
|
-
|
-
|
|
|
|
|
 |
LOC_Os01g02610
|
protein kinase domain containing protein |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02600
|
Ser/Thr receptor-like kinase, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02590
|
receptor-like kinase, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02580
|
protein kinase domain containing protein |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02560
|
Ser/Thr receptor-like kinase, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02570
|
protein kinase domain containing protein, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02550
|
protein kinase domain containing protein, expressed |
|
|
|
|
-
|
|
|
|
|
 |
osa-MIR531b
|
|
|
|
|
|
|
LOC_Os01g02540
|
retrotransposon protein, putative, unclassified |
-
|
-
|
-
|
-
|
-
|
|
|
|
|
 |
LOC_Os01g02530
|
retrotransposon protein, putative, unclassified, expressed |
-
|
-
|
-
|
-
|
-
|
|
|
|
|
 |
LOC_Os01g02520
|
retrotransposon protein, putative, unclassified |
-
|
-
|
-
|
-
|
-
|
|
|
|
|
 |
LOC_Os01g02500
|
glutamyl-tRNA amidotransferase, putative |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02510
|
retrotransposon protein, putative, unclassified, expressed |
-
|
-
|
-
|
-
|
-
|
|
|
|
|
 |
LOC_Os01g02490
|
expressed protein |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02480
|
retrotransposon protein, putative, unclassified |
-
|
-
|
-
|
-
|
-
|
|
|
|
|
 |
LOC_Os01g02470
|
conserved hypothetical protein |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02460
|
receptor kinase LRK10, putative |
|
-
|
-
|
|
|
|
|
|
|
 |
LOC_Os01g02440
|
Ser/Thr receptor-like kinase, putative, expressed |
|
|
-
|
|
|
|
|
|
|
 |
LOC_Os01g02450
|
retrotransposon protein, putative, unclassified |
-
|
-
|
-
|
-
|
-
|
|
|
|
|
 |
LOC_Os01g02420
|
protein kinase domain containing protein |
|
|
|
-
|
|
|
|
|
|
 |
LOC_Os01g02430
|
TAK14, putative, expressed |
|
-
|
|
|
|
|
|
|
|
 |
LOC_Os01g02410
|
protein kinase domain containing protein |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02380
|
retrotransposon protein, putative, Ty3-gypsy subclass |
-
|
-
|
-
|
-
|
-
|
|
|
|
|
 |
LOC_Os01g02390
|
protein kinase domain containing protein, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02400
|
protein kinase domain containing protein, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02360
|
resistance-related receptor-like kinase, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02370
|
receptor-like kinase ARK1AS, putative, expressed |
|
|
-
|
|
-
|
|
|
|
|
 |
LOC_Os01g02334
|
expressed protein |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02350
|
receptor-like kinase ARK1AS, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02320
|
protein kinase domain containing protein, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02300
|
receptor kinase ORK10, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02310
|
expressed protein |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02280
|
Leucine Rich Repeat family protein |
|
|
-
|
-
|
-
|
|
|
|
|
 |
LOC_Os01g02290
|
Ser/Thr receptor-like kinase, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02270
|
conserved hypothetical protein |
-
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02260
|
retrotransposon protein, putative, Ty3-gypsy subclass |
-
|
-
|
-
|
-
|
-
|
|
|
|
|
 |
LOC_Os01g02230
|
retrotransposon protein, putative, Ty3-gypsy subclass |
-
|
-
|
-
|
-
|
-
|
|
|
|
|
 |
osa-MIR1859
|
|
|
|
|
|
|
LOC_Os01g02240
|
transposon protein, putative, unclassified |
-
|
-
|
-
|
-
|
-
|
|
|
|
|
 |
LOC_Os01g02250
|
RGA-1, putative |
|
|
|
-
|
|
|
|
|
|
 |
LOC_Os01g02220
|
retrotransposon protein, putative, Ty3-gypsy subclass |
-
|
-
|
-
|
-
|
-
|
|
|
|
|
 |
LOC_Os01g02210
|
retrotransposon protein, putative, Ty3-gypsy subclass |
-
|
-
|
-
|
-
|
-
|
|
|
|
|
 |
LOC_Os01g02200
|
armadillo/beta-catenin repeat family protein, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02190
|
aquaporin protein, putative, expressed |
|
-
|
|
-
|
|
|
|
|
|
 |
LOC_Os01g02180
|
expressed protein |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02170
|
expressed protein |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02160
|
hydroxyproline-rich glycoprotein family protein, putative, expressed |
-
|
|
-
|
|
|
|
|
|
|
 |
LOC_Os01g02150
|
sulfated surface glycoprotein 185 precursor, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02139
|
expressed protein |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02120
|
osMFT2 MFT-Like2 homologous to Mother of FT and TFL1 gene; contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02130
|
expressed protein |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02110
|
helix-loop-helix DNA-binding domain containing protein, expressed |
|
-
|
|
|
|
|
|
|
|
 |
LOC_Os01g02100
|
transposon protein, putative, unclassified, expressed |
-
|
-
|
-
|
-
|
-
|
|
|
|
|
 |
LOC_Os01g02090
|
expressed protein |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02070
|
invertase/pectin methylesterase inhibitor family protein, putative |
|
-
|
-
|
|
|
|
|
|
|
 |
LOC_Os01g02080
|
peptidyl-prolyl cis-trans isomerase, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02060
|
TOO MANY MOUTHS precursor, putative, expressed |
|
|
-
|
|
|
|
|
|
|
 |
LOC_Os01g02050
|
phosphoenolpyruvate carboxylase, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02040
|
retrotransposon protein, putative, unclassified, expressed |
-
|
-
|
-
|
-
|
-
|
|
|
|
|
 |
LOC_Os01g02010
|
expressed protein |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02020
|
acetyl-CoA acetyltransferase, cytosolic, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02000
|
phosphate transporter 1, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g01990
|
expressed protein |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g01970
|
expressed protein |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g01980
|
hypothetical protein |
|
|
-
|
|
|
|
|
|
|
 |
LOC_Os01g01960
|
transcriptional repressor, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g01950
|
hypothetical protein |
-
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g01940
|
expressed protein |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g01930
|
hypothetical protein |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g01925
|
expressed protein |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g01910
|
hypothetical protein |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g01920
|
HD domain containing protein 2, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g01900
|
retrotransposon protein, putative, unclassified |
-
|
-
|
-
|
-
|
-
|
|
|
|
|
 |
LOC_Os01g01890
|
expressed protein |
|
|
|
-
|
|
|
|
|
|
 |
LOC_Os01g01880
|
expressed protein |
|
-
|
-
|
|
|
|
|
|
|
 |
LOC_Os01g01870
|
helix-loop-helix DNA-binding domain containing protein, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g01860
|
transposon protein, putative, unclassified |
-
|
-
|
-
|
-
|
-
|
|
|
|
|
 |
LOC_Os01g01840
|
helix-loop-helix DNA-binding domain containing protein, expressed |
|
-
|
-
|
|
|
|
|
|
|
 |
LOC_Os01g01850
|
transposon protein, putative, unclassified |
-
|
-
|
-
|
-
|
-
|
|
|
|
|
 |
LOC_Os01g01830
|
OsPOP1 - Putative Prolyl Oligopeptidase homologue, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g01810
|
hypothetical protein |
|
|
-
|
|
|
|
|
|
|
 |
LOC_Os01g01800
|
expressed protein |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g01790
|
expressed protein |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g01770
|
ZOS1-01 - C2H2 zinc finger protein |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g01780
|
exostosin family protein, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g01760
|
conserved hypothetical protein |
|
|
|
-
|
-
|
|
|
|
|
 |
LOC_Os01g01730
|
serine/arginine repetitive matrix protein 2, putative |
|
-
|
-
|
|
|
|
|
|
|
 |
LOC_Os01g01740
|
protein kinase domain containing protein, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g01720
|
pex14, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g01710
|
1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplast precursor, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g01680
|
expressed protein |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g01689
|
phosphatidylinositol 3- and 4-kinase family protein, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g01700
|
anaphase-promoting complex subunit 11, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g01670
|
expressed protein |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g01660
|
isoflavone reductase, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g01650
|
isoflavone reductase homolog IRL, putative, expressed |
|
|
|
-
|
|
|
|
|
|
 |
LOC_Os01g01640
|
Rer1 protein, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g01610
|
IscA-like iron-sulfur assembly protein, mitochondrial precursor, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g01620
|
kinase, pfkB family, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g01590
|
expressed protein |
|
|
-
|
-
|
|
|
|
|
|
 |
LOC_Os01g01600
|
ethylene-responsive protein related, putative, expressed |
-
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g01580
|
expressed protein |
|
|
-
|
-
|
|
|
|
|
|
 |
LOC_Os01g01570
|
kinesin heavy chain, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g01540
|
retrotransposon protein, putative, unclassified |
-
|
-
|
-
|
-
|
-
|
|
|
|
|
 |
LOC_Os01g01550
|
transposon protein, putative, CACTA, En/Spm sub-class |
-
|
-
|
-
|
-
|
-
|
|
|
|
|
 |
LOC_Os01g01560
|
transposon protein, putative, unclassified, expressed |
-
|
-
|
-
|
-
|
-
|
|
|
|
|
 |
LOC_Os01g01520
|
transferase family protein, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g01530
|
transposon protein, putative, CACTA, En/Spm sub-class |
-
|
-
|
-
|
-
|
-
|
|
|
|
|
 |
LOC_Os01g01510
|
sas10/Utp3 family protein, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g01500
|
conserved hypothetical protein |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g01484
|
light-mediated development protein DET1, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g01470
|
no apical meristem protein, putative, expressed |
|
|
-
|
|
-
|
|
|
|
|
 |
LOC_Os01g01460
|
retrotransposon protein, putative, Ty3-gypsy subclass |
-
|
-
|
-
|
-
|
-
|
|
|
|
|
 |
LOC_Os01g01450
|
stress responsive protein, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g01440
|
conserved hypothetical protein |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g01430
|
No apical meristem protein, putative, expressed |
|
-
|
|
|
|
|
|
|
|
 |
LOC_Os01g01420
|
expressed protein |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g01410
|
TKL_IRAK_C-LEC.1 - TKL_IRAK_C-LEC has homology to C-type lectin receptors, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g01400
|
expressed protein |
|
|
|
|
|
|
|
|
|
 |
2 |
Chr1
|
AQDY001 | culm length | AQDY002 | culm length | |
647235
:1405165
|
LOC_Os01g03480
|
expressed protein |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03464
|
conserved hypothetical protein |
|
|
|
-
|
|
|
|
|
|
 |
LOC_Os01g03452
|
transposon protein, putative, unclassified |
-
|
-
|
-
|
-
|
-
|
|
|
|
|
 |
LOC_Os01g03440
|
transposon protein, putative, unclassified |
-
|
-
|
-
|
-
|
-
|
|
|
|
|
 |
LOC_Os01g03429
|
conserved hypothetical protein |
-
|
|
|
-
|
-
|
|
|
|
|
 |
LOC_Os01g03410
|
ubiquitin, putative |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03420
|
seven in absentia protein family protein, putative |
|
-
|
|
|
|
|
|
|
|
 |
LOC_Os01g03400
|
E3 ubiquitin-protein ligase SINA-like 2, putative |
-
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03380
|
BBTI6 - Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed |
|
|
-
|
|
|
|
|
|
|
 |
LOC_Os01g03390
|
BBTI7 - Bowman-Birk type bran trypsin inhibitor precursor, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03370
|
senescence-induced receptor-like serine/threonine-protein kinase precursor, putative |
|
-
|
|
|
|
|
|
|
|
 |
LOC_Os01g03360
|
BBTI5 - Bowman-Birk type bran trypsin inhibitor precursor, expressed |
|
|
|
-
|
|
|
|
|
|
 |
LOC_Os01g03340
|
BBTI4 - Bowman-Birk type bran trypsin inhibitor precursor, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03350
|
conserved hypothetical protein |
|
-
|
|
|
|
|
|
|
|
 |
LOC_Os01g03330
|
BBTI3 - Bowman-Birk type bran trypsin inhibitor precursor, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03320
|
BBTI2 - Bowman-Birk type bran trypsin inhibitor precursor, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03310
|
BBTI1 - Bowman-Birk type bran trypsin inhibitor precursor, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03300
|
seven in absentia protein family protein |
|
|
-
|
-
|
|
|
|
|
|
 |
LOC_Os01g03280
|
hypothetical protein |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03290
|
seven in absentia protein family domain containing protein |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03270
|
conserved hypothetical protein |
|
-
|
|
|
|
|
|
|
|
 |
LOC_Os01g03260
|
hypothetical protein |
-
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03250
|
hypothetical protein |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03240
|
conserved hypothetical protein |
-
|
-
|
|
-
|
|
|
|
|
|
 |
LOC_Os01g03220
|
hypothetical protein |
|
|
|
|
-
|
|
|
|
|
 |
LOC_Os01g03230
|
retrotransposon protein, putative, unclassified, expressed |
-
|
-
|
-
|
-
|
-
|
|
|
|
|
 |
LOC_Os01g03210
|
conserved hypothetical protein |
|
|
|
|
-
|
|
|
|
|
 |
LOC_Os01g03200
|
retrotransposon protein, putative, Ty1-copia subclass, expressed |
-
|
-
|
-
|
-
|
-
|
|
|
|
|
 |
LOC_Os01g03190
|
expressed protein |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03180
|
retrotransposon protein, putative, unclassified, expressed |
-
|
-
|
-
|
-
|
-
|
|
|
|
|
 |
LOC_Os01g03160
|
xylosyltransferase, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03170
|
seven in absentia protein family protein, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03144
|
white-brown complex homolog protein 7, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
osa-MIR159b
|
|
|
|
|
|
|
LOC_Os01g03130
|
expressed protein |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03100
|
protein binding protein, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03110
|
expressed protein |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03080
|
expressed protein |
|
|
|
-
|
|
|
|
|
|
 |
LOC_Os01g03090
|
methyltransferase, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03070
|
transposon protein, putative, unclassified, expressed |
-
|
-
|
-
|
-
|
-
|
|
|
|
|
 |
LOC_Os01g03060
|
splicing factor, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03050
|
fruit protein PKIWI502, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03030
|
alanyl-tRNA synthetase, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03040
|
expressed protein |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g03020
|
tRNA synthetase class I, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02990
|
hypothetical protein |
|
|
-
|
|
-
|
|
|
|
|
 |
LOC_Os01g03010
|
hypothetical protein |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02970
|
retrotransposon protein, putative, unclassified |
-
|
-
|
-
|
-
|
-
|
|
|
|
|
 |
LOC_Os01g02980
|
hypothetical protein |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02960
|
expressed protein |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02950
|
hypothetical protein |
|
|
-
|
|
|
|
|
|
|
 |
LOC_Os01g02940
|
glycosyltransferase protein, putative, expressed |
|
|
-
|
|
|
|
|
|
|
 |
LOC_Os01g02930
|
glycosyltransferase protein, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02920
|
glycosyltransferase protein, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02910
|
glycosyltransferase, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02900
|
glycosyltransferase, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02890
|
phosphatidylserine synthase, putative |
-
|
|
|
-
|
|
|
|
|
|
 |
LOC_Os01g02884
|
ATP-dependent RNA helicase DHX36, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02880
|
fructose-bisphospate aldolase isozyme, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02870
|
auxin-induced protein 5NG4, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02860
|
expressed protein |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02850
|
hypothetical protein |
|
|
-
|
|
|
|
|
|
|
 |
LOC_Os01g02840
|
resistance-related receptor-like kinase, putative |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02830
|
receptor-like kinase ARK1AS, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02780
|
TAK33, putative, expressed |
|
|
|
-
|
-
|
|
|
|
|
 |
LOC_Os01g02790
|
protein kinase domain containing protein, expressed |
|
|
-
|
-
|
-
|
|
|
|
|
 |
LOC_Os01g02800
|
receptor-like kinase ARK1AS, putative, expressed |
|
|
-
|
|
|
|
|
|
|
 |
LOC_Os01g02810
|
resistance-related receptor-like kinase, putative |
|
|
|
-
|
|
|
|
|
|
 |
LOC_Os01g02770
|
resistance-related receptor-like kinase, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02760
|
receptor-like kinase, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02750
|
protein kinase domain containing protein, expressed |
|
|
|
|
|
|
|
|
|
 |
osa-MIR1860
|
|
|
|
|
|
|
LOC_Os01g02730
|
TAK14, putative, expressed |
|
|
|
-
|
|
|
|
|
|
 |
LOC_Os01g02740
|
retrotransposon protein, putative, unclassified |
-
|
-
|
-
|
-
|
-
|
|
|
|
|
 |
LOC_Os01g02710
|
LRk-type protein, putative |
|
|
-
|
|
|
|
|
|
|
 |
LOC_Os01g02720
|
elongation factor Tu, putative, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02690
|
resistance-related receptor-like kinase, putative |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02700
|
protein kinase domain containing protein, expressed |
|
|
|
|
|
|
|
|
|
 |
LOC_Os01g02680
|
protein kinase domain containing protein, expressed |
|
|
|
|